H2N-CH(CH3)-C(=O)NH2









 





 





 













Nitrogen


Nuclear Quadrupole Coupling Constants

in Alaninamide


 








 









Nitrogen nqcc's in alaninamide and a best-fit (rs/ro) molecular structure were determined by Lavrich et al. [1].  Calculation of the nitrogen nqcc's was made here on this best-fit structure and on an ropt structure given by B3P86/6-31G(3d,3p) optimization.  These calculated nqcc's are compared with the experimental values in Tables 1 and 2.  Structure parameters are given in Table 3.  Calculated and experimental rotational constants are compared in Table 4.

 








In Tables 1 and 2, subscripts a,b,c refer to the principal axes of the inertia tensor; subscripts x,y,z to the principal axes of the nqcc tensor.  ETA = (Xxx - Xyy)/Xzz.

RMS is the root mean square difference between calculated and experimental diagonal nqcc's (percentage of the average of the magnitudes of the experimental nqcc's).  RSD is the calibration residual standard deviation of the B3PW91/6-311+G(df,pd) model for calculation of the nitrogen efg's/nqcc's.


 








 








   








Table 1. Amino 14N nqcc's in Alaninamide (MHz).  Calculation was made on the best-fit [1] and ropt  structures.

   










Best-Fit
 ropt
Expt. [1]
   








Xaa
1.719

1.439

1.368(4)

Xbb
0.897

0.595

0.606(5)

Xcc -
2.616
-
2.034
-
1.974

Xab
1.110

1.533




Xac
1.251

0.595




Xbc -
2.529
-
2.636




 







RMS
0.454 (34. %)

0.054 (4.1 %)




RSD
0.030 (1.3 %) 0.030 (1.3 %)


 







Xxx
1.794

1.882




Xyy
2.578

2.642




Xzz -
4.372
-
4.524




ETA
0.179

0.168




 








 








 









   








Table 2. Amido 14N nqcc's in Alaninamide (MHz).  Calculation was made on the best-fit [1] and ropt  structures.

   










Best-Fit
 ropt
Expt. [1]
   








Xaa
1.446

1.708

1.618(3)

Xbb -
0.251

0.518

0.598(5)

Xcc -
1.195
-
2.226
-
2.216

Xab
0.585

0.122




Xac -
1.148
-
0.871




Xbc
2.408

2.226




 







RMS
0.772 (52. %)

0.070 (4.7 %)




RSD
0.030 (1.3 %) 0.030 (1.3 %)


 







Xxx
1.480

1.490




Xyy
2.018

2.124




Xzz -
3.498
-
3.615




ETA
0.154

0.175




 








 








 
 


Table 3. Alaninamide.  Structure parameters (Å and degrees).
 







 N
 C,1,B1
 C,2,B2,1,A1
 C,2,B3,1,A2,3,D1,0
 O,4,B4,2,A3,1,D2,0
 N,4,B5,2,A4,1,D3,0
 H,1,B6,2,A5,4,D4,0
 H,1,B7,2,A6,4,D5,0
 H,2,B8,1,A7,3,D6,0
 H,3,B9,2,A8,1,D7,0
 H,3,B10,2,A9,1,D8,0
 H,3,B11,2,A10,1,D9,0
 H,6,B12,4,A11,2,D10,0
 H,6,B13,4,A12,2,D11,0










Best-Fit *       ropt




B1=1.48284
B2=1.51962
B3=1.52768
B4=1.25784
B5=1.33077
B6=1.01668
B7=1.01657
B8=1.10213
B9=1.09363
B10=1.09581
B11=1.09590
B12=1.00976
B13=1.00781
A1=109.656
A2=109.349
A3=118.970
A4=117.226
A5=108.805
A6=109.265
A7=113.868
A8=109.737
A9=110.861
A10=109.852
A11=117.579
A12=117.318
D1=121.852
D2=167.405
D3=-21.102
D4=171.214
D5=-73.763
D6=-121.594
D7=175.760
D8=-64.135
D9=55.850
D10=-3.478
D11=-159.621
 B1=1.4640073
 B2=1.52378867
 B3=1.53078929
 B4=1.21834716
 B5=1.35063777
 B6=1.01434923
 B7=1.01466118
 B8=1.09813415
 B9=1.09057229
 B10=1.09408973
 B11=1.09395509
 B12=1.00950015
 B13=1.00621127
 A1=110.12776684
 A2=111.43520268
 A3=121.01736175
 A4=114.71141281
 A5=110.08718563
 A6=110.48578466
 A7=113.15106644
 A8=109.97526796
 A9=110.67739522
 A10=110.50843693
 A11=118.47598753
 A12=119.15029805
 D1=120.4281597
 D2=165.60127299
 D3=-15.29168762
 D4=160.29119012
 D5=-82.45345113
 D6=-121.46899311
 D7=175.01671191
 D8=-65.1733097
 D9=54.92649236
 D10=-2.78705813
 D11=-174.66751537

 



* Generated here from best-fit atomic coordinates given in Ref. [1].




 








 






Table 4.  Alaninamide.  Rotational Constants (MHz).
 







 


 ropt
   Expt. [1]











A

4954.2
4931.929(1)



B

3157.2

3114.6022(8)



C

2294.0

2297.2573(8)










 








 








[1] R.J.Lavrich, J.O.Farrar, and M.J.Tubergen, J.Phys.Chem. A 103,4659(1999).


 














Alanine
Acetamide
N-Acetylalainemethylester



Formamide







 








 








Table of Contents




Molecules/Nitrogen




 








 













Alaninamide.html






Last Modified 17 April 2015