NH2CH2C(=O)OH


 
 
 


Nitrogen


Nuclear Quadrupole Coupling Constants

in Glycine


 







 

 


 




Calculation of the nitrogen nqcc's in glycine was made here on the molecular structures given by HF/6-311+G(d,p) and HF/6-311++G(3df,3pd) optimizations.  These are compared with the experimental nqcc's [1] in Tables 1 and 2.  Structure parameters are given in Table 3, rotational constants in Table 4.
 
Calculation was made on each of the two lowest energy conformers shown below:
 
      Conformer I          Conformer II


 
 
In Tables 1 and 2, subscripts a,b,c refer to the principal axes of the inertia tensor; x,y,z to the principal axes of the nqcc tensor.  Ø (degrees) is the angle between its subscripted parameters.  ETA = (Xxx - Xyy)/Xzz.
RSD is the calibration residual standard deviation of the B3PW91/6-311+G(df,pd) model for calculation of nitrogen nqcc's.
 
 
   







Table 1.  14N nqcc's in Glycine I (MHz).  Calculation was made on (1) HF/6-311+G(d,p) and (2) HF/6-311++G(3df,3pd) optimized structures.
   








Calc. (1)

Calc. (2)
Expt. [1]
   






Xaa - 1.308 - 1.330 - 1.208(9)
Xbb - 0.592 - 0.561 - 0.343(8)
Xcc 1.900 1.891 1.552(10)
|Xab| 4.021 4.005
 
RMS 0.254 (24 %) 0.243 (24 %)
RSD 0.030 (1.3 %) 0.030 (1.3 %)
 
Xxx 3.087 3.078
Xyy 1.900 1.891
Xzz - 4.987 - 4.969
ETA - 0.238 - 0.239
Øz,a   42.45   42.26
Øa,NC   31.60   31.67
Øz,NC * 105.94 106.07
 
 
* Here and in Table 2, this is the angle between the external (to the H2NC pyrimid and in the ab-plane) z-axis and the NC axis.
 
 
   







Table 2.  14N nqcc's in Glycine II (MHz).  Calculation was made on (1) HF/6-311+G(d,p) and (2) HF/6-311++G(3df,3pd) optimized structures.
   








Calc. (1)

Calc. (2)
Expt.
   






Xaa 1.750 1.762 1.773(2)
Xbb - 3.575 - 3.584 - 3.194(4)
Xcc 1.826 1.822 1.421(4)
|Xab| 2.645 2.629
 
RMS 0.321 (15 %) 0.323 (15 %)
RSD 0.030 (1.3 %) 0.030 (1.3 %)
 
Xxx 2.840 2.839
Xyy 1.826 1.822
Xzz - 4.666 - 4.661
ETA - 0.217 - 0.218
Øz,a   67.59   67.74
Øa,NC   37.69   37.61
Øz,NC 105.28 105.34
 
 
 
 
Table 3.  Glycine.  Selected molecular structure parameters (Å and degrees).  Complete structures are given here in Z-matrix format: Glycine I and Glycine II.
 
ropt (1) = HF/6-311+G(d,p) optimization.
ropt (2) = HF/6-311++G(3df,3pd) optimization.
 
       Conformer I ropt (1) ropt (2)
 

CC 1.5154 1.5142
CN 1.4364 1.4352
NH 0.9997 0.9978
CCN 115.53 115.49
CNH 111.18 111.10
CCNH ±59.51 ±59.36
       Conformer II
CC 1.5270 1.5252
CN 1.4550 1.4527
NH 0.9975 0.9953
CCN 112.80 113.06
CNH 112.78 112.74
CCNH ±118.42 ±118.43


 
 
Table 4.  Glycine.  Rotational Constants (MHz).  Normal Species.
 
ropt (1) = HF/6-311+G(d,p) optimization.
ropt (2) = HF/6-311++G(3df,3pd) optimization.
 
  Calc. ropt (1) Calc. ropt (2)    Expt. [1]
   I A 10681.0 10727.8 10341.5279(49)
B   3919.1   3930.9   3876.1806(23)
C   2961.7   2971.6   2912.3518(16)
 
   II A 10334.4 10375.0 10130.1521(57)
B   4103.2   4105.9   4071.5120(17)
C   3037.4   3041.9   3007.4852(14)
 
 

[1] F.J.Lovas, Y.Kawashima, J.-U.Grabow, R.D.Suenram, G.T.Fraser, and E.Hirota, Astrophys. 455,L201(1995).

 
Related ...
V.V.Ilyushin, E.A.Alekseev, S.F.Dyubko, R.A.Motiyenko, and F.J.Lovas, J.Mol.Spectrosc. 231,15(2005).

 







 
N-Acetylglycine
 

 








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Last Modified 23 Feb 2006