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NH2CH2C(=O)OH
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Nitrogen |
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Nuclear
Quadrupole Coupling Constants |
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in Glycine
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Calculation
of the
nitrogen nqcc's in glycine was made here on the molecular
structures given by HF/6-311+G(d,p) and HF/6-311++G(3df,3pd)
optimizations. These are compared with the experimental nqcc's [1] in Tables 1 and 2. Structure
parameters are
given in Table 3, rotational constants in Table 4.
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Calculation was made on each of the two lowest energy conformers shown below: |
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Conformer I |
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Conformer II |
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In Tables 1 and 2, subscripts a,b,c refer to the
principal axes of the inertia tensor; x,y,z to the principal axes
of the nqcc tensor.
Ø (degrees) is the angle between its subscripted
parameters. ETA = (Xxx - Xyy)/Xzz. |
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RSD is the
calibration residual standard deviation of the B3PW91/6-311+G(df,pd) model for calculation of nitrogen nqcc's. |
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Table 1. 14N nqcc's in Glycine I (MHz). Calculation was made
on (1) HF/6-311+G(d,p) and (2) HF/6-311++G(3df,3pd) optimized structures. |
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Calc. (1)
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Calc. (2) |
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Expt. [1] |
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Xaa |
- |
1.308 |
- |
1.330 |
- |
1.208(9) |
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Xbb |
- |
0.592 |
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0.561 |
- |
0.343(8) |
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Xcc |
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1.900 |
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1.891 |
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1.552(10) |
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|Xab| |
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4.021 |
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4.005 |
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RMS |
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0.254 (24 %) |
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0.243 (24 %) |
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RSD |
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0.030 (1.3 %) |
0.030 (1.3 %) |
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Xxx |
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3.087 |
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3.078 |
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Xyy |
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1.900 |
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1.891 |
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Xzz |
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4.987 |
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4.969 |
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ETA |
- |
0.238 |
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0.239 |
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Øz,a |
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42.45 |
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42.26 |
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Øa,NC |
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31.60 |
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31.67 |
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Øz,NC * |
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105.94 |
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106.07 |
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* Here and in Table 2, this is the angle between the external (to the H2NC pyrimid and in the ab-plane) z-axis and the NC axis. |
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Table 2. 14N nqcc's in Glycine II (MHz). Calculation was made
on (1) HF/6-311+G(d,p) and (2) HF/6-311++G(3df,3pd) optimized structures. |
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Calc. (1)
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Calc. (2) |
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Expt. |
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Xaa |
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1.750 |
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1.762 |
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1.773(2) |
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Xbb |
- |
3.575 |
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3.584 |
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3.194(4) |
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Xcc |
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1.826 |
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1.822 |
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1.421(4) |
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|Xab| |
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2.645 |
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2.629 |
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RMS |
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0.321 (15 %) |
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0.323 (15 %) |
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RSD |
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0.030 (1.3 %) |
0.030 (1.3 %) |
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Xxx |
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2.840 |
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2.839 |
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Xyy |
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1.826 |
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1.822 |
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Xzz |
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4.666 |
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4.661 |
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ETA |
- |
0.217 |
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0.218 |
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Øz,a |
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67.59 |
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67.74 |
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Øa,NC |
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37.69 |
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37.61 |
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Øz,NC |
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105.28 |
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105.34 |
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Table 3. Glycine. Selected molecular structure parameters (Å
and degrees). Complete structures are given here in Z-matrix format: Glycine I and Glycine II. |
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ropt (1) = HF/6-311+G(d,p) optimization. |
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ropt (2) = HF/6-311++G(3df,3pd) optimization. |
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Conformer I |
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ropt (1) |
ropt (2) |
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CC |
1.5154 |
1.5142 |
CN |
1.4364 |
1.4352 |
NH |
0.9997 |
0.9978 |
CCN |
115.53 |
115.49 |
CNH |
111.18 |
111.10 |
CCNH |
±59.51 |
±59.36 |
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Conformer II |
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CC |
1.5270 |
1.5252 |
CN |
1.4550 |
1.4527 |
NH |
0.9975 |
0.9953 |
CCN |
112.80 |
113.06 |
CNH |
112.78 |
112.74 |
CCNH |
±118.42 |
±118.43 |
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Table 4. Glycine. Rotational Constants (MHz). Normal Species. |
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ropt (1) = HF/6-311+G(d,p) optimization. |
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ropt (2) = HF/6-311++G(3df,3pd) optimization. |
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Calc. ropt (1) |
Calc. ropt (2) |
Expt. [1] |
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I |
A |
10681.0 |
10727.8 |
10341.5279(49) |
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B |
3919.1 |
3930.9 |
3876.1806(23) |
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C |
2961.7 |
2971.6 |
2912.3518(16) |
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II |
A |
10334.4 |
10375.0 |
10130.1521(57) |
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B |
4103.2 |
4105.9 |
4071.5120(17) |
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C |
3037.4 |
3041.9 |
3007.4852(14) |
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[1] F.J.Lovas, Y.Kawashima, J.-U.Grabow, R.D.Suenram, G.T.Fraser, and E.Hirota, Astrophys. 455,L201(1995).
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Related ... |
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V.V.Ilyushin, E.A.Alekseev, S.F.Dyubko, R.A.Motiyenko, and F.J.Lovas, J.Mol.Spectrosc. 231,15(2005). |
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N-Acetylglycine |
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Table of Contents |
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Molecules/Nitrogen |
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Glycine.html |
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Last
Modified 23 Feb 2006 |
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