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Uridine
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Nitrogen
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Nuclear
Quadrupole Coupling Constants |
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in Uridine
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14N nqcc's in
uridine were determined by Peņa et al. [1], which authors also derived
an MP2/6-311++G(d,p) optimized molecular structure.
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Calculation of the nqcc's was made here on this MP2 structure. These calculated nqcc's are
compared with the experimental values in Tables 1 and 2.
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Calculation of the efg's/nqcc's was made with B3PW91/6-311+G(d,p) model.
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In Tables 1 and 2,
subscripts a,b,c refer to the principal axes of the inertia tensor,
subscripts x,y,z to the principal axes of the nqcc tensor. The
z-principal axis of the nqcc tensor is perpendicular to the symmetry
plane of the molecule. ETA = (Xxx
- Xyy)/Xzz. |
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RMS is the root mean square
difference between calculated and experimental nqcc's (percentage of
average experimental nqcc). RSD is the residual standard deviation
of calibration of the model used for calculation of
the efg's/nqcc's.
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Table 1. 14N(11) (see figure above) nqcc's Uridine (MHz). Calculation was made on the MP2/6-311++G(d,p) optimized structure.
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Calc
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Expt. [1] |
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14N(11) |
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Xaa |
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1.469 |
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1.540(42) |
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Xbb |
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1.484 |
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1.456(72) |
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Xcc |
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2.953 |
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2.996(72) |
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Xab |
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0.347 |
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Xac |
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1.190
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Xbc |
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1.425
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RMS
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0.051 (2.5 %) |
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RSD
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0.086 (3.8 %) |
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Xxx |
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1.768 |
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Xyy |
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1.902 |
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Xzz |
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3.670 |
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ETA
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0.0367 |
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Table 2. 14N(18) (see figure above) nqcc's Uridine (MHz). Calculation was made on the MP2/6-311++G(d,p) optimized structure.
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Calc
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Expt. [1] |
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14N(18) |
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Xaa |
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1.759 |
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1.719(40) |
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Xbb |
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1.106 |
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1.261(70) |
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Xcc |
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2.865 |
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2.979(70) |
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Xab |
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0.417 |
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Xac |
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1.135
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Xbc |
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1.196
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RMS
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0.113 (5.7 %) |
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RSD
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0.086 (3.8 %) |
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Xxx |
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1.424 |
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Xyy |
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2.051
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Xzz |
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3.475 |
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ETA
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0.180 |
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[1] M.I.Peņa, C.Cabezas, and J.L.Alonso, Angew.Chem.Int.Ed. 54,2991(2015).
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Uracil
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Thymine
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2-Pyridone
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Table of Contents |
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Molecules/Nitrogen |
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Uridine.html |
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Last
Modified 8 July 2015 |
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