Uridine




 








Nitrogen


Nuclear Quadrupole Coupling Constants

in Uridine


 








 




































 








14N nqcc's in uridine were determined by Peņa et al. [1], which authors also derived an MP2/6-311++G(d,p) optimized molecular structure.


 








Calculation of the nqcc's was made here on this MP2 structure.  These calculated nqcc's are compared with the experimental values in Tables 1 and 2.












Calculation of the efg's/nqcc's was made with B3PW91/6-311+G(d,p) model.











In Tables 1 and 2, subscripts a,b,c refer to the principal axes of the inertia tensor, subscripts x,y,z to the principal axes of the nqcc tensor.  The z-principal axis of the nqcc tensor is perpendicular to the symmetry plane of the molecule.  ETA = (Xxx - Xyy)/Xzz.

RMS is the root mean square difference between calculated and experimental nqcc's (percentage of average experimental nqcc).  RSD is the residual standard deviation of calibration of the model used for calculation of the efg's/nqcc's.


 








 








   








Table 1.  14N(11) (see figure above) nqcc's Uridine (MHz).  Calculation was made on the MP2/6-311++G(d,p) optimized structure.

   












Calc

Expt. [1]
   








14N(11)
Xaa
1.469
1.540(42)



Xbb
1.484
1.456(72)



Xcc - 2.953 - 2.996(72)



Xab
0.347





Xac -
1.190






Xbc
1.425




 
 








RMS

0.051 (2.5 %)





RSD

0.086 (3.8 %)





 








Xxx
1.768





Xyy
1.902





Xzz - 3.670





ETA

0.0367



 
 






   








 








   








Table 2.  14N(18) (see figure above) nqcc's Uridine (MHz).  Calculation was made on the MP2/6-311++G(d,p) optimized structure.

   












Calc

Expt. [1]
   








14N(18)
Xaa
1.759
1.719(40)



Xbb
1.106
1.261(70)



Xcc - 2.865 - 2.979(70)



Xab
0.417





Xac -
1.135






Xbc
1.196




 
 








RMS

0.113 (5.7 %)





RSD

0.086 (3.8 %)





 








Xxx
1.424





Xyy
2.051






Xzz - 3.475





ETA

0.180



 
 







 








 








 








[1] M.I.Peņa, C.Cabezas, and J.L.Alonso, Angew.Chem.Int.Ed. 54,2991(2015).

 









 









Uracil
Thymine
2-Pyridone



 








Table of Contents




Molecules/Nitrogen




 








 













Uridine.html






Last Modified 8 July 2015